All functions

PermutResult2D()

2D bin plot of the features of top N domain-protein pairs as identified by permutationPval

XYZ.p.adjust()

XYZ.p.adjust adjusts p.value in the permutation result

parReplicate()

parReplicate function from: https://stackoverflow.com/questions/19281010/simplest-way-to-do-parallel-replicate

permutationPval()

calculate permutation pval for association between X and Z if both are connected to Y

permutationPvalHelper formula2colnames() node_attr2colnames() formula2nodes() checkSelectNodes() checkSelectNodesList() filterByFormula() filterByList() calcObservedStatistic() calcPermutedStatistic() observedVSpermuted() aggregatePermutations()

functions that are called inside permutationPval