download and read Molecular Interaction ontology into R using ontologyIndex package

loadMIontology(directory = "./", date = NULL,
  propagate_relationships = "is_a", extract_tags = "minimal")

Arguments

directory

where to keep local copy of the MI ontology

date

character, such as "2017_08_25", use specific version of ontology (local copy must be present), by default (NULL) download the latest version

propagate_relationships

parameter for reading ontology into R, details: get_ontology

extract_tags

parameter for reading ontology into R, details: get_ontology

Value

MITABdata